About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_597364_599534_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
597364 - 599534
Intron Length:
2171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GATTCTTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TTACCTTTAACT
Flanking Amino Acid:
AVLSLSTGQSSSRVPFNCCS
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
78
0.63
0.9
70
41.1
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
81.3
1.06
1.1
90.57
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016512
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026197
597303 - 628859
31557