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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_636058_636441_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
636058 - 636441
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
AACATCCCAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TTCTCCTAAATG
Flanking Amino Acid:
ETGQQSLLFQIDYPEIAESI
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
59.4
0.21
1
52
37
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
66.9
0.39
1.8
70.75
43.1

Associated Gene:

Gene:
SF3A2
Ensembl Gene ID:
ENSAPLG00000030775
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018598
633360 - 639019
5660