Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_637250_637701_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

637250 - 637701

Intron Length:

452

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGTTAA

5'SS Class:

major

3'SS Sequence:

CAAATGAATTCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AACCTTTTAATT

Flanking Amino Acid:

HTQGKKHQTNLARRAAKEAK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

30.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

57.3

0.17

1.1

45.6

Minor 5ss

42.1

-0.9

2.8

43.6

Minor BPS

60.9

0.42

1.2

68.17

37.1

Associated Gene:

Gene:

SF3A2

Ensembl Gene ID:

ENSAPLG00000030775

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018598

633360 - 639019

5660