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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_637749_638067_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
637749 - 638067
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CTTTATTTAACT
Flanking Amino Acid:
KLCLTLHNNEGSYLAHTQGK
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
85.3
0.79
0.7
84.5
30.4
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
75.8
0.89
1.4
88.66
36.3

Associated Gene:

Gene:
SF3A2
Ensembl Gene ID:
ENSAPLG00000030775
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018598
633360 - 639019
5660