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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_638140_638637_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
638140 - 638637
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTAATAATT
Flanking Amino Acid:
LALETIDINKDPYFMKNHLG
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.3
0.7
0.8
73.4
36.4
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
62.1
0.46
1.8
85.83
33.8

Associated Gene:

Gene:
SF3A2
Ensembl Gene ID:
ENSAPLG00000030775
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018598
633360 - 639019
5660