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Intron Name: Anas_platyrhynchos_platyrhynchos_29_642117_643777_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

642117 - 643777

Intron Length:

1661

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGGAGC

5'SS Class:

major

3'SS Sequence:

GGGTCTTTTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAA

U12 Branch Point Sequence:

ATGTGTTGAACC

Flanking Amino Acid:

LFYFRTDEAEPIGALLLEHC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.8

0.7

43.2

Major BPS

0.55

1.1

63.4

44.3

Major PPT

74.9

0.56

65.4

45.5

Minor 5ss

31.5

-2.1

3.3

43.1

44.1

Minor BPS

52.7

0.06

1.9

65.3

40.5

Associated Gene:

Gene:

PLEKHJ1

Ensembl Gene ID:

ENSAPLG00000010955

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027938

638009 - 646714

8706

ENSAPLT00000011404

642020 - 647714

5695