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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_670133_671555_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
670133 - 671555
Intron Length:
1423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
TCCCTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATGAT
U12 Branch Point Sequence:
TCCCTTTCAACA
Flanking Amino Acid:
GNKPLALATSGFSYSSGSVA
Intron Amino Acid Position:
896

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
68.8
38
Major BPS
64.5
0.36
1.1
55.4
40.3
Major PPT
76.3
0.59
0.8
72.6
30.8
Minor 5ss
36
-1.6
3.6
50.9
45.8
Minor BPS
52.2
0.06
1.5
60
40.4

Associated Gene:

Gene:
DOT1L
Ensembl Gene ID:
ENSAPLG00000009414
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045499
660985 - 715812
54828
ENSAPLT00000042708
660985 - 715812
54828
ENSAPLT00000009872
638786 - 710408
71623