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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_671683_672773_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
671683 - 672773
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ACTTCTTGTACT
Flanking Amino Acid:
VVLPSRVEKVRSTPSPVHQN
Intron Amino Acid Position:
854

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
75.6
0.58
0.8
69
31.7
Minor 5ss
29.8
-2.3
2.6
30.2
36.8
Minor BPS
56.7
0.29
1.8
74.82
41.8

Associated Gene:

Gene:
DOT1L
Ensembl Gene ID:
ENSAPLG00000009414
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045499
660985 - 715812
54828
ENSAPLT00000042708
660985 - 715812
54828
ENSAPLT00000009872
638786 - 710408
71623