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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_675505_676149_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
675505 - 676149
Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTACA
5'SS Class:
major
3'SS Sequence:
CATGTCTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTCTTTTGATC
Flanking Amino Acid:
SELRNQSLQLLKARCEELKL
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
69.6
36.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.6
0.67
0.9
73
36.9
Minor 5ss
29.6
-2.3
2.7
31.3
37.1
Minor BPS
60.5
0.31
1.2
66.89
32.5

Associated Gene:

Gene:
DOT1L
Ensembl Gene ID:
ENSAPLG00000009414
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045499
660985 - 715812
54828
ENSAPLT00000042708
660985 - 715812
54828
ENSAPLT00000009872
638786 - 710408
71623