About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_676288_676807_R


Intron Information:

Intron Rank:
15

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
676288 - 676807

Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAGCAACC

5'SS Class:
major

3'SS Sequence:
CTCCATTTTGTAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TACTGAA

U12 Branch Point Sequence:
TTACCCTCCATT

Flanking Amino Acid:
KRLFQQKLDELGVKALTYND

Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
68.2
0.43
1.2
63.4
41.4

Major BPS
74.4
0.61
0.9
63.6
35.5

Major PPT
77.4
0.62
0.8
72.4
31.9

Minor 5ss
38.9
-1.2
3.2
53
43.8

Minor BPS
51.8
0.14
2
74.83
41.9

Associated Gene:

Gene:
DOT1L

Ensembl Gene ID:

Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

660985 - 715812
54828

660985 - 715812
54828

638786 - 710408
71623