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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_685071_687833_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
685071 - 687833
Intron Length:
2763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGAATG
5'SS Class:
major
3'SS Sequence:
TTTCTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAC
U12 Branch Point Sequence:
GGCTCCCTAACT
Flanking Amino Acid:
NFRINSRNLSDIGTIMRVVE
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
66.8
44.6
Major BPS
65.1
0.38
1
57
39.5
Major PPT
86.6
0.82
0.6
85.9
21.2
Minor 5ss
36.2
-1.6
3.3
49.5
46.5
Minor BPS
65.7
0.57
1.7
78.66
42.9

Associated Gene:

Gene:
DOT1L
Ensembl Gene ID:
ENSAPLG00000009414
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045499
660985 - 715812
54828
ENSAPLT00000042708
660985 - 715812
54828
ENSAPLT00000009872
638786 - 710408
71623