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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_706107_707639_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
706107 - 707639
Intron Length:
1533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATGTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGCTTTCTATGT
Flanking Amino Acid:
NRAIDSIHQLWKGTTQPMKL
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
77.5
0.62
0.9
74
35.6
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
42.9
-0.4
2
60.14
43.9

Associated Gene:

Gene:
DOT1L
Ensembl Gene ID:
ENSAPLG00000009414
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045499
660985 - 715812
54828
ENSAPLT00000042708
660985 - 715812
54828
ENSAPLT00000009872
638786 - 710408
71623