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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_756366_757101_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
756366 - 757101
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTGGCTTTTATT
Flanking Amino Acid:
VMSASKFTFKRIGYLAASQC
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.1
0.68
0.8
75
33.4
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
51.9
0.14
1.7
67.81
43.6

Associated Gene:

Gene:
AP3D1
Ensembl Gene ID:
ENSAPLG00000009684
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010161
741326 - 784512
43187
ENSAPLT00000036493
741326 - 784512
43187