About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_759026_760207_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
759026 - 760207
Intron Length:
1182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTTCTCACTT
Flanking Amino Acid:
LKEKLEDPDPGVQSAAVNVI
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.2
35.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.5
0.75
0.8
76.4
37.3
Minor 5ss
26.7
-2.7
3
28.5
38.4
Minor BPS
55
0.24
1.8
75.15
42.4

Associated Gene:

Gene:
AP3D1
Ensembl Gene ID:
ENSAPLG00000009684
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036493
741326 - 784512
43187
ENSAPLT00000010161
741326 - 784512
43187