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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_760686_762450_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
760686 - 762450
Intron Length:
1765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TATTCCCTATTT
Flanking Amino Acid:
LIEPLTNLIHSTSAMSLLYE
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83.9
0.76
0.9
81.3
35.7
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
60.8
0.42
1.9
82.12
39.2

Associated Gene:

Gene:
AP3D1
Ensembl Gene ID:
ENSAPLG00000009684
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036493
741326 - 784512
43187
ENSAPLT00000010161
741326 - 784512
43187