Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_764485_764925_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

764485 - 764925

Intron Length:

441

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAACGA

5'SS Class:

major

3'SS Sequence:

TTTTTTTTCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

CTTGTAATAAGT

Flanking Amino Acid:

GMPNHSASIQLCVQKLRILI

Intron Amino Acid Position:

303

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

57.6

41.3

Major BPS

84.4

0.85

1.1

34.5

Major PPT

93.7

0.98

0.6

88.2

29.1

Minor 5ss

36.8

-1.5

3.1

48.2

47.3

Minor BPS

43.9

-0.3

2.2

65.08

45.4

Associated Gene:

Gene:

AP3D1

Ensembl Gene ID:

ENSAPLG00000009684

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036493

741326 - 784512

43187

ENSAPLT00000010161

741326 - 784512

43187