Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_766897_766987_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

766897 - 766987

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTCAGTGGT

5'SS Class:

major

3'SS Sequence:

TTCCTTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TGTCCATTAATA

Flanking Amino Acid:

SNYQYITNFEWYISILVELT

Intron Amino Acid Position:

417

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.3

68.8

42.2

Major BPS

70.8

0.52

70.6

31.6

Major PPT

87.2

0.84

0.6

84.1

23.8

Minor 5ss

-2.3

3.1

38.3

41.7

Minor BPS

66.6

0.52

1.6

75.34

35.4

Associated Gene:

Gene:

AP3D1

Ensembl Gene ID:

ENSAPLG00000009684

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010161

741326 - 784512

43187

ENSAPLT00000036493

741326 - 784512

43187