Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_770232_771166_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

770232 - 771166

Intron Length:

935

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGTGAA

5'SS Class:

major

3'SS Sequence:

CTCTTCCTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

AACATTCTAACT

Flanking Amino Acid:

PEIDEEELARRREARKQEQA

Intron Amino Acid Position:

668

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

67.4

33.4

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

82.6

0.73

0.7

24.2

Minor 5ss

27.8

-2.5

27.4

37.6

Minor BPS

49.2

0.02

1.7

64.5

39.8

Associated Gene:

Gene:

AP3D1

Ensembl Gene ID:

ENSAPLG00000009684

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036493

741326 - 784512

43187

ENSAPLT00000010161

741326 - 784512

43187