Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_771239_772207_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

771239 - 772207

Intron Length:

969

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

TTCATTTTCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

ATGCTCAGAACA

Flanking Amino Acid:

YIKSSPSPQKRYQDTPGVEH

Intron Amino Acid Position:

692

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.96

0.8

77.5

32.9

Major BPS

100

1.24

0.5

100

Major PPT

83.2

0.75

0.8

76.2

37.6

Minor 5ss

26.6

-2.7

30.5

43.3

Minor BPS

48.4

-0.1

1.7

61.15

38.2

Associated Gene:

Gene:

AP3D1

Ensembl Gene ID:

ENSAPLG00000009684

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036493

741326 - 784512

43187

ENSAPLT00000010161

741326 - 784512

43187