Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_773206_773834_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

773206 - 773834

Intron Length:

629

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAG

U12 Branch Point Sequence:

CACTTTTTCAGT

Flanking Amino Acid:

VDIITEEMPENALPSDEDDK

Intron Amino Acid Position:

784

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

1.2

38.1

Major BPS

0.65

1.5

85.7

34.9

Major PPT

85.6

0.8

0.7

80.7

24.6

Minor 5ss

-1.7

2.7

41.8

44.6

Minor BPS

45.7

-0.2

59.25

44.9

Associated Gene:

Gene:

AP3D1

Ensembl Gene ID:

ENSAPLG00000009684

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036493

741326 - 784512

43187

ENSAPLT00000010161

741326 - 784512

43187