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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_775148_776235_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
775148 - 776235
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCTCTGTATTT
Flanking Amino Acid:
LDNLVSGKPSRPLADSEKLP
Intron Amino Acid Position:
816

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
80
0.75
1
78.6
31
Major PPT
71.6
0.49
1.1
75.2
38.5
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
49.8
0.06
2.2
74.81
43.2

Associated Gene:

Gene:
AP3D1
Ensembl Gene ID:
ENSAPLG00000009684
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036493
741326 - 784512
43187