Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_777908_778423_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

777908 - 778423

Intron Length:

516

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAACAAT

5'SS Class:

strong_major

3'SS Sequence:

TTATTCTTGGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

GTTTCTTTAAGG

Flanking Amino Acid:

EEQQEEDEGKKSSKHKKKKH

Intron Amino Acid Position:

928

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

80.3

34.3

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

75.4

0.57

73.9

36.5

Minor 5ss

40.4

-1.1

3.1

56.9

47.4

Minor BPS

68.6

0.45

1.7

71.8

41.3

Associated Gene:

Gene:

AP3D1

Ensembl Gene ID:

ENSAPLG00000009684

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036493

741326 - 784512

43187

ENSAPLT00000010161

741326 - 784512

43187