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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_778756_779134_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
778756 - 779134
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATTT
Flanking Amino Acid:
LLAENPYIKMTYDIQGNLQN
Intron Amino Acid Position:
993

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.4
0.82
0.7
81
29.7
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
62.8
0.48
1.8
83.89
37.6

Associated Gene:

Gene:
AP3D1
Ensembl Gene ID:
ENSAPLG00000009684
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036493
741326 - 784512
43187
ENSAPLT00000010161
741326 - 784512
43187