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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_842743_842944_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
842743 - 842944
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCCGTTTTG
5'SS Class:
major
3'SS Sequence:
TGTATGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTGTTTGTATG
Flanking Amino Acid:
PKPPEHNLRFLYSDEVQI
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
59.5
45
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
77.9
0.63
1
73.7
41.7
Minor 5ss
27.6
-2.6
4
40.6
45.6
Minor BPS
45.3
-0.5
1.8
54.72
41.7

Associated Gene:

Gene:
BTBD2
Ensembl Gene ID:
ENSAPLG00000010930
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038788
842717 - 854717
12001