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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_843102_843316_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
843102 - 843316
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTGTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
TCTGCTTTATGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
69.4
0.44
1.1
65.2
45.5
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
50.1
0.08
2
70.73
46.8

Associated Gene:

Gene:
BTBD2
Ensembl Gene ID:
ENSAPLG00000010930
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021089
842945 - 854717
11773