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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_843102_846863_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
843102 - 846863
Intron Length:
3762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTCATTACTA
Flanking Amino Acid:
ADNAFMLLTQARLFDEPQLA
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.3
0.52
0.9
67.4
38.1
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
59
0.28
1.9
72.1
40.4

Associated Gene:

Gene:
BTBD2
Ensembl Gene ID:
ENSAPLG00000010930
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038788
842717 - 854717
12001