Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_852814_853850_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

852814 - 853850

Intron Length:

1037

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTCTC

5'SS Class:

strong_major

3'SS Sequence:

ACATCTCTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

TAAAATTTAACA

Flanking Amino Acid:

GPTDYQVNIQIIHTDSNTVL

Intron Amino Acid Position:

204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

78.1

36.6

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

76.5

0.6

0.9

69.8

35.7

Minor 5ss

38.8

-1.3

53.4

43.7

Minor BPS

60.6

0.33

1.5

67.62

Associated Gene:

Gene:

BTBD2

Ensembl Gene ID:

ENSAPLG00000010930

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038788

842717 - 854717

12001

ENSAPLT00000021089

842945 - 854717

11773

ENSAPLT00000011377

843317 - 855717

12401