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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_853998_854555_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
853998 - 854555
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAG
5'SS Class:
major
3'SS Sequence:
GTAACCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTTCTGTAACC
Flanking Amino Acid:
VNYTACATLKGPDSHYGTKG
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
59.6
41.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
67.6
0.4
1
59.3
41.3
Minor 5ss
35.1
-1.7
3.4
46.5
48.8
Minor BPS
65.4
0.46
2
77.59
39

Associated Gene:

Gene:
BTBD2
Ensembl Gene ID:
ENSAPLG00000010930
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038788
842717 - 854717
12001
ENSAPLT00000021089
842945 - 854717
11773
ENSAPLT00000011377
843317 - 855717
12401