About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_865276_865492_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
865276 - 865492
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGCACA
5'SS Class:
major
3'SS Sequence:
TTGCCCCGCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
GTGCTTATGACT
Flanking Amino Acid:
MSINTHLGKEQSRRDDLEA
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
67.8
39.1
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
68.2
0.41
0.9
65.7
35.9
Minor 5ss
33.1
-1.9
3
40.8
45.2
Minor BPS
48.6
-0
1.6
65.59
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010987
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011460
864148 - 866925
2778