About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_925997_926325_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
925997 - 926325
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
CCGTGTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CGGCACTGACCC
Flanking Amino Acid:
LFTAAVLLSPDRPWLTESKK
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
54.2
45
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
67.8
0.4
0.9
60.5
35.4
Minor 5ss
25.1
-2.9
3.1
22.5
37.5
Minor BPS
42.2
-0.6
1.8
46.56
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011493
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011992
923117 - 936507
13391