About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_926871_927784_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
926871 - 927784
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTATGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCTAT
U12 Branch Point Sequence:
CTCTGCCTATGT
Flanking Amino Acid:
QNDQIILLKAGCLEVLLIRM
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.3
36.7
Major BPS
53.6
0.09
1.4
52.4
44.8
Major PPT
67
0.38
1
65.9
39.6
Minor 5ss
32.2
-2
3.4
44
43.3
Minor BPS
40.5
-0.6
2.4
59.68
49.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011493
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011992
923117 - 936507
13391