Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_992491_993113_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

992491 - 993113

Intron Length:

623

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGCCAG

5'SS Class:

major

3'SS Sequence:

CTGTTCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTTAA

U12 Branch Point Sequence:

TTCTACTTAAAT

Flanking Amino Acid:

NVAISAAVKQSLVSSKKAVA

Intron Amino Acid Position:

737

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

62.5

43.8

Major BPS

74.4

0.61

0.9

63.9

34.9

Major PPT

82.9

0.74

0.8

77.1

31.6

Minor 5ss

38.9

-1.2

3.1

47.8

42.2

Minor BPS

71.8

0.76

1.6

86.49

Associated Gene:

Gene:

REXO1

Ensembl Gene ID:

ENSAPLG00000011954

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030954

970473 - 1009888

39416

ENSAPLT00000012460

976552 - 1009888

33337