Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_996178_997268_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

996178 - 997268

Intron Length:

1091

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTACGTACC

5'SS Class:

major

3'SS Sequence:

CTTCTCACTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAC

U12 Branch Point Sequence:

CTCTTCTCACTG

Flanking Amino Acid:

LVPNSPSSTNKTSNKKVVSH

Intron Amino Acid Position:

879

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.4

0.41

1.1

40.6

Major BPS

0.87

0.8

85.6

Major PPT

80.3

0.68

0.8

74.3

29.2

Minor 5ss

38.1

-1.3

2.9

52.2

38.4

Minor BPS

46.4

-0.4

1.9

50.15

44.9

Associated Gene:

Gene:

REXO1

Ensembl Gene ID:

ENSAPLG00000011954

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030954

970473 - 1009888

39416

ENSAPLT00000012460

976552 - 1009888

33337