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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10007075_10007971_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10007075 - 10007971
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GACTTTTTAACA
Flanking Amino Acid:
AVLYCFLNSEVQGELKRKWR
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.8
0.63
0.9
73.4
34.8
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
68.5
0.58
1.2
68.52
38

Associated Gene:

Gene:
VIPR2
Ensembl Gene ID:
ENSAPLG00000015252
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015927
10006901 - 10064590
57690