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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10008014_10008094_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10008014 - 10008094
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGCATACTAACT
Flanking Amino Acid:
IFELCLGSFQGLIVAVLYCF
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
88.2
0.86
0.8
80.5
37
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
47.4
-0.1
1.9
67.3
42.8

Associated Gene:

Gene:
VIPR2
Ensembl Gene ID:
ENSAPLG00000015252
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015927
10006901 - 10064590
57690