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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10008225_10011400_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10008225 - 10011400
Intron Length:
3176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
DVGGNDQSQYKRLAKSTLLL
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.8
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.9
0.74
0.9
78.8
38.7
Minor 5ss
32.2
-2
3
41.4
39.1
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
VIPR2
Ensembl Gene ID:
ENSAPLG00000015252
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015927
10006901 - 10064590
57690