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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10011493_10016785_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10011493 - 10016785
Intron Length:
5293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
AAGTCAGAAATC
Flanking Amino Acid:
IRIPILISIILNFILFISII
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
89.8
0.89
0.7
84.7
30.1
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
40.9
-0.7
2.3
50.75
40.3

Associated Gene:

Gene:
VIPR2
Ensembl Gene ID:
ENSAPLG00000015252
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015927
10006901 - 10064590
57690