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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10016856_10018211_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10016856 - 10018211
Intron Length:
1356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
TTAGTGTCAACA
Flanking Amino Acid:
TVTRIILEDTGCWDTNEHGG
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
81.8
38.5
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
38.9
-1.2
2.8
43.3
43.8
Minor BPS
46.9
-0.2
2.3
63.77
42.7

Associated Gene:

Gene:
VIPR2
Ensembl Gene ID:
ENSAPLG00000015252
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015927
10006901 - 10064590
57690