Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10026681_10045319_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10026681 - 10045319

Intron Length:

18639

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TATTTCTGTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATGTAT

U12 Branch Point Sequence:

TTCTGCATATAT

Flanking Amino Acid:

GYNDYEDEYKVNFYVRVKAI

Intron Amino Acid Position:

120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

76.9

33.7

Major BPS

63.7

0.34

1.4

63.7

43.9

Major PPT

81.7

0.71

0.9

77.3

36.6

Minor 5ss

31.4

-2.1

3.1

39.2

46.2

Minor BPS

45.3

-0.2

2.3

69.99

46.5

Associated Gene:

Gene:

VIPR2

Ensembl Gene ID:

ENSAPLG00000015252

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015927

10006901 - 10064590

57690