About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_100478130_100479966_F

Intron Information:

Intron Rank:
125273
Intron Class:
major
Intron Phase:
Intron Coordinates:
100478130 - 100479966
Intron Length:
1837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCACT
5'SS Class:
major
3'SS Sequence:
TGTATAATATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTCTTATGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
75.3
40.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
63.3
0.3
1
61.4
43.5
Minor 5ss
47.6
-0.2
2.6
67.7
43
Minor BPS
52.5
0.16
1.6
72.76
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017457
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030023
100478006 - 100480404
2399