About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10048069_10061585_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10048069 - 10061585
Intron Length:
13517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTGTTATTAATG
Flanking Amino Acid:
LKNAKPVDYKGCVGVWDNIT
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.5
0.8
0.9
79.9
37.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
56.2
0.06
1.7
59.51
43

Associated Gene:

Gene:
VIPR2
Ensembl Gene ID:
ENSAPLG00000015252
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015927
10006901 - 10064590
57690