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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10061689_10064542_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10061689 - 10064542
Intron Length:
2854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TAATTTGACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CATTTGTTAATT
Flanking Amino Acid:
LLLLCWSLGPVNGVHPECRL
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
72.7
38.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
67.1
0.39
1
61.6
43.2
Minor 5ss
35
-1.7
2.9
45.5
42.6
Minor BPS
58.9
0.36
2.1
76.1
41.2

Associated Gene:

Gene:
VIPR2
Ensembl Gene ID:
ENSAPLG00000015252
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015927
10006901 - 10064590
57690