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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_100790996_100793086_F

Intron Information:

Intron Rank:
146996
Intron Class:
major
Intron Phase:
Intron Coordinates:
100790996 - 100793086
Intron Length:
2091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTATA
5'SS Class:
strong_major
3'SS Sequence:
CTACTTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTCATTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.1
83.2
30.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76.1
0.59
0.8
71.9
32.4
Minor 5ss
39.4
-1.2
2.8
50.9
45.5
Minor BPS
59.9
0.39
1.6
76.2
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029173
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042723
100790801 - 100801301
10501