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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_100793160_100797930_F

Intron Information:

Intron Rank:
146997
Intron Class:
major
Intron Phase:
Intron Coordinates:
100793160 - 100797930
Intron Length:
4771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTAATATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCTTTTGTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.8
31.7
Major BPS
80
0.75
1
78.6
31
Major PPT
74
0.54
1
72.4
41.5
Minor 5ss
39.9
-1.1
2.8
51.4
45.5
Minor BPS
56.2
0.19
2
69.67
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029173
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042723
100790801 - 100801301
10501