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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_100798002_100801104_F

Intron Information:

Intron Rank:
146998
Intron Class:
major
Intron Phase:
Intron Coordinates:
100798002 - 100801104
Intron Length:
3103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
AATCTGTCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
60.6
0.24
1
52.7
41.8
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
73.6
0.72
1.4
82.18
31.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029173
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042723
100790801 - 100801301
10501