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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_100848704_100848860_F

Intron Information:

Intron Rank:
139220
Intron Class:
major
Intron Phase:
Intron Coordinates:
100848704 - 100848860
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGCTCATTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
77.8
0.63
0.9
83.4
25.4
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
53
0.17
2
73.64
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024939
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048147
100848588 - 100851254
2667