Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_100849039_100849967_F

Intron Information:

Intron Rank:

139218

Intron Class:

major

Intron Phase:

Intron Coordinates:

100849039 - 100849967

Intron Length:

929

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTGTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATAGCAT

U12 Branch Point Sequence:

ATAGCATGCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

1.2

35.3

Major BPS

54.5

0.11

1.4

65.8

Major PPT

91.8

0.94

0.7

84.6

Minor 5ss

28.4

-2.5

2.9

33.4

41.6

Minor BPS

43.2

-0.5

2.2

56.95

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024939

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027587

100848588 - 100851254

2667

ENSAPLT00000048147

100848588 - 100851254

2667