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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_100967032_100970032_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
100967032 - 100970032
Intron Length:
3001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
TSRMPVYVGQLKSDLDKQDG
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.4
0.84
0.7
81.3
29.6
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
CDH19
Ensembl Gene ID:
ENSAPLG00000008016
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008346
100895953 - 101002820
106868