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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_100977589_100978484_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
100977589 - 100978484
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTGTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
GATCACTGAACT
Flanking Amino Acid:
MNDNPPKFIERLYYLNVSED
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
76.9
33.7
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
85.9
0.81
0.7
84.9
29.9
Minor 5ss
35.1
-1.7
2.8
38.8
40.3
Minor BPS
57.8
0.32
1.7
74.44
41

Associated Gene:

Gene:
CDH19
Ensembl Gene ID:
ENSAPLG00000008016
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008346
100895953 - 101002820
106868