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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_100978670_100979884_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
100978670 - 100979884
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCTTTCTTAACA
Flanking Amino Acid:
TQEGIILLKKRVDYESKRRH
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
76.8
33.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
84.1
0.77
0.8
80.8
29.7
Minor 5ss
28.2
-2.5
3.1
38.3
46.6
Minor BPS
85.3
1.1
1
86.69
32.1

Associated Gene:

Gene:
CDH19
Ensembl Gene ID:
ENSAPLG00000008016
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008346
100895953 - 101002820
106868